miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|158367642|gb|EX676027.1|EX676027 CGAGGTTGAGCTGAGTCTTGGGCTGTCGTTGAACGGGAGGTTCGGGGTGGACCCTAGAGCCAAGGCGGGGTTGCATCTCA
AACGTTCGTCTTCAGTCTCTGACTTCTCGCCTGCGGCGGCGACGGCGGGGACGGCTGGGGTGAGAGAGGAGGAAGCAACG
ACGTGTCGTGTGCCGAGGCCGTGTGTGGTGCCTCTGATGAGAACGTGCTCGCTTCCGAGTGAAACGGAGGAGGAATGGAG
GAAGAGGAAGGAGCTGCAGAGCTTGAGGAGAATGGAGGCGAAGAGGAAGCGGTCGGAGAAGCAGCAGAGGAGTTATTCGA
AGTTGCATAGGGATCGGAGCCGTGAGAATTTCGACGTGGATAGGCTAGCTGAGCCCATCAATGCAGGTGGCGGTTGTCCT
CCGCTTCCGCCGGTACCGCCGCCCCCGGAATCACAGGGGACTATTACTGGGTCTCAGGGGAGTGGCTCGTCGGGGGTTAC
CGATTCTGAGAGCCAAGCTGCTCAAGTAGTGCACAAATGCACTGAAGTAAGAAGCGGTTCTAATATCGAGTCGTTGCCAA
AGAGTGAGAAGGAACCACTTGTCCCCTCGCAGATGACAAAGTCTGCTGAAATCTCAGCTGATAACTCAGGGCAGTTGAAT
GGAGCTGTCCAAATGGAAAACCACTGTGCGAACTCCACAACCCCTCACAAGGAAACCAAGGAGATTGTGAGGAATGTGTT
GGATAATATGCCATCTGTGTCTACTAAAGGAGATGGTCCCAACGGTAAAAGAGTAGAAGGCTTTCTTTACAGGTACAAGA
AAGGTGAGGAAGTGAGGATTGTATGTGTTTGCCATGGCAGCTTTCTAACTCCAGCCGAGTTTGTGAAGCATGCCGGCGGT
GGCGACGTGCCACATCCTCTTAAACATATAGTGGTCAATCCTACTCCATTTTGTAATAGTGTGCTTGTCGATCATTCAAA




Most similar to sp|Q94F39|AFP3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94F39|AFP3_ARATH Ninja-family protein AFP3 OS=Arabidopsis
           thaliana GN=AFP3 PE=1 SV=1
          Length = 231

 Score =  196 bits (497), Expect = 3e-49
 Identities = 135/313 (43%), Positives = 164/313 (52%), Gaps = 3/313 (0%)
 Frame = +2

Query: 2   EVELSLGLSLNGRFGVDPRAKAGLHLKRSSSVSDFSPAAATAGTAGVREEEATTCRVPRP 181
           E+EL LGLSLNGRFGVDP AK    L RS+SV D            V +           
Sbjct: 15  EIELDLGLSLNGRFGVDPLAKT--RLMRSTSVLDLV----------VNDRSG-------- 54

Query: 182 CVVPLMRTCSLPSETEEEWRKRKELQSLRRMEAKRKRSEKQQRSYSKLHRDRSRENFDVD 361
               L RTCSLP ETEEEWRKRKELQSLRR+EA      K++RS      ++ R++    
Sbjct: 55  ----LSRTCSLPVETEEEWRKRKELQSLRRLEA------KRKRS------EKQRKH---- 94

Query: 362 RLAEPINAGGGCXXXXXXXXXXEXXXXXXXXXXXXXXXVTDSESQAAQVVHKCTEVRSGS 541
                  A GG                                    +VV + +   SGS
Sbjct: 95  ------KACGG----------------------------------EEKVVEEGSIGSSGS 114

Query: 542 NIESLPKSEKEPLVP---SQMTKSAEISADNSGQLNGAVQMENHCANSTTPHKETKEIVR 712
               L  SE + L+P   +   KS E S  ++                + P    KE  +
Sbjct: 115 GSSGL--SEVDTLLPPVQATTNKSVETSPSSA---------------QSQPENLGKEASQ 157

Query: 713 NVLDNMPSVSTKGDGPNGKRVEGFLYRYKKGEEVRIVCVCHGSFLTPAEFVKHAGGGDVP 892
           N++++MP VST GDGPNGK++ GFLYRY+KGEEVRIVCVCHGSFL+PAEFVKHAGGGDV 
Sbjct: 158 NIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVA 217

Query: 893 HPLKHIVVNPTPF 931
           HPLKHIVVNP+PF
Sbjct: 218 HPLKHIVVNPSPF 230